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@MICS-Lab

MICS-Lab

Research laboratory in Mathematics and Computer Science at CentraleSupélec.
README.md

Welcome to the MICS organization 👋

The MICS is a research laboratory in Mathematics and Computer Science at CentraleSupélec (Paris-Saclay University).

🧬 Biomathematics team:

  • We develop mathematical and computational methods in Deep Learning and/or statistics to help solve major challenges in life sciences and health
  • Many projects, e.g. sopa, are in collaboration with the Gustave Roussy Institute

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  1. novae novae Public

    Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many other features.

    Python 126 12

  2. thunder thunder Public

    [NeurIPS25 D&B Spotlight] A tile-level histopathology image understanding benchmark

    Python 45 14

  3. CustOmics CustOmics Public

    Forked from HakimBenkirane/CustOmics

    A deep-learning framework for multi-omics integration

    Jupyter Notebook 1

  4. s4_digital_pathology s4_digital_pathology Public

    Python 26 1

  5. lincs lincs Public

    Learn and Infer Non Compensatory Sortings

    C++ 5 2

Repositories

Showing 10 of 30 repositories
  • novae Public

    Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many other features.

    MICS-Lab/novae’s past year of commit activity
    Python 126 BSD-3-Clause 12 5 0 Updated Apr 9, 2026
  • thunder Public

    [NeurIPS25 D&B Spotlight] A tile-level histopathology image understanding benchmark

    MICS-Lab/thunder’s past year of commit activity
    Python 45 CC-BY-4.0 14 1 0 Updated Apr 8, 2026
  • CellViT_for_STHELAR Public

    Code from the CellViT repository and adapted to build STHELAR dataset

    MICS-Lab/CellViT_for_STHELAR’s past year of commit activity
    Jupyter Notebook 3 0 0 0 Updated Apr 2, 2026
  • STHELAR Public

    A multi-tissue dataset linking spatial transcriptomics and histology for cell type annotation

    MICS-Lab/STHELAR’s past year of commit activity
    Jupyter Notebook 10 0 0 0 Updated Apr 2, 2026
  • Model-comparison-with-phylogenetic-data Public

    Code from the article "A Bayesian framework for comparing models of clonal dynamics from phylogenetic data, applied to JAK2V617F-driven Myeloproliferative Neoplasms"

    MICS-Lab/Model-comparison-with-phylogenetic-data’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 16, 2026
  • pelc Public

    Python Eplet Load Calculator

    MICS-Lab/pelc’s past year of commit activity
    Python 4 0 0 0 Updated Feb 17, 2026
  • HistAug Public
    MICS-Lab/HistAug’s past year of commit activity
    Python 17 CC-BY-4.0 1 0 0 Updated Nov 18, 2025
  • figure_tips Public

    Tips for publication-ready figures

    MICS-Lab/figure_tips’s past year of commit activity
    1 0 0 0 Updated Oct 31, 2025
  • lincs Public

    Learn and Infer Non Compensatory Sortings

    MICS-Lab/lincs’s past year of commit activity
    C++ 5 LGPL-3.0 2 6 1 Updated Oct 14, 2025
  • novae_benchmark Public
    MICS-Lab/novae_benchmark’s past year of commit activity
    Python 2 BSD-3-Clause 0 0 0 Updated Feb 27, 2025
View all repositories

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